ChemistryAtlas Docs

ChemistryAtlas documentation

Public guides for ChemistryAtlas chemistry apps, AI synthesis tools, molecular visualization workflows, Open Resources, and Reading Room collections.

Public docs

Documentation

Open Resources

Open Resources collects community-maintained research assets with contributor acknowledgement, review status, and optional small file uploads. Chemistry moves faster when useful resources are easy to find, cite, reuse, and improve. Open Resources is a communit

Documentation

Reading Room Collections

Reading Room Collections let users organize saved papers, research news, discoveries, and imported bibliography items around a topic, project, grant, class, or reading workflow. The former My Paper Topics tab is now Collections. The left panel shows My collect

Documentation

AI Synthesis and Generative Design Pro

ChemistryAtlas exposes a two-tier AI chemistry layer: The apps are designed to work immediately with local deterministic backends and to upgrade automatically when optional sidecar services are configured. Set these environment variables on the backend service

Documentation

ChimeraXWeb

ChimeraXWeb requires a UCSF ChimeraX executable in the backend container or sidecar. It is not an optional enhancement: jobs fail when chimerax is missing. ChimeraXWeb uses UCSF ChimeraX for structure superposition, RMSD, contacts, H-bonds, clashes, surface re

Documentation

Computing Limits

Computing Limit Config controls daily free CIF quotas and computing-credit overage rules for expensive structure jobs such as Phonon Stability Screening and Structure Relaxation. When a user exceeds the daily free quota, each extra CIF consumes the app's confi

Documentation

SEO Pages

ChemistryAtlas is primarily a Vue single-page app, so public crawl targets are served as static pages under frontendv2/public/seo/. /seo/apps/spectra-analysis/, /seo/apps/safety-solvents/, /seo/apps/discovery-design/, /seo/apps/ai-synthesis/,